• About CBME
  • Overview
  • Publications
  • Industry Partnerships
  • Facilities
  • Administrative Personnel
  • Faculty Positions
  • Contact Us
  • Visiting CBME
  • Giving
• Our People
  • All
  • Faculty
  • Staff
  • Post Doctoral Students
  • Graduate Students
  • Undergraduate Students
• Academics
  • Academics Home
  • A Career in Biomedical Engineering
  • CBME Undergraduate Program
  • CBME Graduate Program
  • Fellowships
  • Internships
  • Contact Us
• Research
  • Research Home
  • Research Projects
  • prem
  • Industry Partnerships
  • Langmuir
• Schools
  • School of Engineering
  • School of Medicine
  • College of Arts & Sciences
• Departments
  • Department of Chemical and Nuclear Engineering
  • Department of Electrical and Computer Engineering
  • Department of Biology
  • Department of Mechanical Engineering
  • Department of Pathology
  • Department of Molecular Genetics and Microbiology
• Login

• Overview
• Publications
• Industry Partnerships
• Facilities
• Administrative Personnel
• Faculty Positions
• Contact Us
• Visiting CBME
• Giving

Publications

Here are 50 recent publications which fairly reflect the interests and expertise of the faculty of the Center for Biomedical Engineering:

• Ethical implications of nanotechnology
  • K. Mills, & C.B. Fleddermann, Getting the Best from Nano. IEEE Transactions on Technology and Society, 24(4), 18-26. 2005.
• Biofuel cells
  • “Glucose Oxidase Anode for Biofuel Cell Based on Direct Electron Transfer”, D. Ivnitski, B. Branch, P. Atanassov and C. Apblett, Electrochemistry Communications, 8 (2006) 1204-1210.
• Bioweapon defense
  • “Defense Against Bioterror: Detection Technologies, Implementation Strategies and Commercial Opportunities”, Dennis Morrison, Fred Milanovich, Dmitri Ivnitski, and Thomas Austin (eds). (2005).  NATO Science Series, Kluwer Academic Publishers, Boston/Dordrecht/London, 400 p.
• Microfluidics and nanofluidics
  • "Remotely powered self-propelling particles and micropumps based on miniature diodes", Suk Tai Chang, Vesselin N. Paunov, Dimiter N. Petsev and Orlin D. Velev, Nature Materials doi:10.1038/nmat1843, 2007.
  • “Using Bicellar Mixtures to Form Suspended Lipid Bilayers on Nanotextured Silicon Chips,” Zeineldin, R.; Last, J.A.; Slade, A.L.; Ista, L.K.; Bisong, P.; O’Brien, M.J. Brueck, S.R.J. Sasaki, D.Y.; Lopez, G.P. Langmuir, 2006, 22, 8163-68.
  • “Electrostatic Potential and Electroosmotic Flow in a Cylindrical Capillary Filled with Symmetric Electrolyte: Analytic Solutions in Thin Double Layer Approximation,” Petsev, D.; Lopez, G.P. J. Coll. Interface Sci. 2006, 294, 492-498.
  • “An Electrokinetic Cell Model for Analysis and Optimization of Electroosmotic Pumps,” Piyasena, M.E.; Lopez, G.P.; Petsev, D.N. Sens. & Actuat. B 2006, 113, 461-467.
  • “Microchannel protein separation by field gradient focusing”, D. N. Petsev, G. P. Lopez, C. F. Ivory and Scott Sibbett, Lab on Chip, 5:587-597 (2005).
  • "Fabrication of an integrated nanofluidic chip using intererometric lithography", M. J. O'Brien, P. Bissong, L. K. Ista, E. M. Rabinovich,  A. L. Garcia, S. S. Sibbett, G. P. Lopez, S. R. J. Brueck, J. Vac. Sci. Technol. B 21:2941 (2003).
  • “Integrated Biomedical Nanosensor using Guided Resonance in Photonic Crystal Structures”, O. Levi, W. Suh, M. M. Lee, J. Zhang, S. R. J. Brueck, S. Fan, and J. S. Harris,  Proc. SPIE 6095, 60950N (2006).
  • "Multistage isoelectric focusing in a Poly(dimethylsiloxane) microfluidic chip", Cui, H., K. Horiuchi, P. Dutta and C. F. Ivory, , Analytical Chemistry 77:7878-86 (2005).
  • “Isoelectric focusing in a Poly(dimethylsiloxane) microfluidic chip”, Cui, H., K. Horiuchi, P. Dutta and C. F. Ivory,  Analytical Chemistry (2005).
  • “Peak Compression and Resolution for Electrophoretic Separations in Diverging Microchannels”, Ross, D., C. F. Ivory, L. E. Locascio, and K. E. Van Cott,  Electrophoresis, 25:3694-3704 (2004).
• Biomaterials and tissue engineering
  • “Porous Poly(DL-Lactic-co­-Glycolic Acid)/Calcium Phosphate Cement Composites for Bone Tissue Reconstruction”, P.Q. Ruhe, E.L. Hedberg, P.H.M. Spauwen, J.A. Jansen, A.G. Mikos, Tissue Engineering, 12, 789-800 (2006).
  • “In Vivo Degradation of Porous Poly(Propylene Fumarate)/Poly(DL-Lactic-co-Glycolic Acid) Composite Scaffolds”, E.L. Hedberg, H.C. Kroese-Deutman, C.K. Shih, R.S. Crowther, D.H. Carney, A.G. Mikos, J.A. Jansen, Biomaterials, 26, 4616-4623, 2005.
  • “Diazo Coupling Method for Covalent attachment of Proteins to Solid Substrates,” Wu, Y.; Buranda, T.; Metzenberg, R.L.; Sklar, L.A.; Lopez, G.P. Bioconjugate Chem. 2006, 17, 359-365.
  • “Robust Hybrid Thin Films that Incorporate Lamellar Phospholipid Bilayer Assemblies and Transmembrane Proteins,” Gupta, G.; Atanassov, P.; Lopez, G.P. Biointerphases 2006, 1, 6-10.
  • "Nanometer-Thick Conformal Pore-Sealing of Self-Assembled Mesoporous Silica by Plasma-Assisted Atomic Layer Deposition", Journal of the American Chemical Society, 2006 vol. 128, no. 14, p. 11018-11019, Ying-Bing Jiang, Nanguo Liu, Henry Gerung, Joseph L. Cecchi, C. Jeffrey Brinker.
  • “Robust Hybrid Thin Films that Incorporate Lamellar Phospholipid Bilayer Assemblies and Transmembrane Proteins”, G. Gupta, P. Atanassov and G.P. Lopez, Biointerphases, 1 (2006) 6-10.
  • "Adsorption Kinetics of Alkanethiol Self-Assembly on Ge(111)”, Madhava R. Kosuri, Roya Cones, Qiming Li, Sang M. Han, Bruce C. Bunker, and Thomas M. Mayer, Langmuir, 20(3), 835 (2004).
• Biomolecular analysis
  • “Super-Helix Formation Induced by Cyanine J-Aggregates onto Random-Coil Carboxymethyl Amylose as Template”, Kim, O.-K.; Je, J.; Jernigan, G.; Buckley, L.; Whitten, D. J. Am. Chem. Soc. 2006 128(2); 510-516.  
  • “Superquenching as a Detector for Microsphere-Based Flow Cytometric Assays”, Zeineldin, R.; Piyasena, M. E.; Bergstedt, T. S.; Sklar, L. A.; Whitten, D.; Lopez, G. P. Cytometry, Part A, 2006, 69A, 335-341.  
  • “Cooperative Self-Assembly of Cyanines on Carboxymethylamylose and other Anionic Scaffolds”,  Whitten, D. G.; Kim, O.-K.; Lopez, G. P.; Achyuthan, K. E., Pure Appl. Chem. 2006, 78, 2313-2323.
  • “Supramolecular Photochemical Self-Assemblies for Fluorescence “turn on” and “turn off” Assays for Chem-Bio Helices”, Achyuthan, K. A.; Lu, L.; Lopez, G. P.; Whitten, D. G., Photochem. Photobiol. Sci. 2006, 5, 859-868.
  • “Hand-held sensor for saliva and other fluid-based diagnostics”, D. Ivnitski, R. Sitdikov, N. Ivnitski. (2004), Anal. Chim. Acta, 504, 265-269.
  • “A Packed Micro Column Approach to a Cell-Based Biosensor,” Flemming, J.H.; Baca, H.K.; Werner-Washburne, M.; Brozik, S.M.; Lopez, G.P. Sens. Actuat. B. 2006, 113, 376-381.
  • "XPS and ToF-SIMS Characterization of Thiolated Single-stranded DNA Oligomers Self-assembled onto Gold Surfaces," Lee, C.Y.; Canavan, H.E.; Gamble, L.J.; and Castner, D.G., Langmuir, 21 (11) 5134-5141 (2005).
  • "Quantitative XPS and ToF-SIMS Characterization of the Components in DNA Microarrays," May, C.J.; Canavan, H.E.; and Castner, D.G., Analytical Chemistry, 76 (4), 1114-1122 (2004).
  • “A Packed Micro Column Approach to a Cell-Based Biosensor”, Jeb H. Flemming, Helen K. Baca, Margaret Werner-Washburne, Susan M. Brozik, Gabriel P. López Sensors & Actuators 113: 376-381 (2005).
  • “Hand-held amperometric sensor for saliva and other oral fluid-based diagnostics”, Ivnitski D., Sitdikov R., Ivnitski N. (2004) Anal. Chim. Acta., v. 505, p.265-269.
  • “Detection of Hanta, Influenza A and Para Influenza Virus, in Smart Biosensor Technology”, Wikins E. and  Sitdikov R. . Ed. Knopf G.K., Bassi A.S., CRC Press, Boca Raton, FL. 2006, p.597-616.
  • “Studies of Listeria Monocytogenes-Antibody Binding Using Electro-orientation”, Bunin V. D., O. V. Ignatov, O. I. Guliy, A. G. Voloshin., L. A. Dykman, D. O’Neil, D. Ivnitski. (2004). Biosensors & Bioelectronics 19, 1759-1761.
• Biological and ecological sensing networks and systems
  • “Critical elements of biological sensor technology for deployment in an environmental network system”, Dmitri Ivnitski, Dennis Morrison, D. O’Neil. In: Dennis Morrison, Fred Milanovich, Dmitri Ivnitski, and Thomas Austin (eds). (2005). Defense Against Bioterror: Detection Technologies, Implementation Strategies and Commercial Opportunities. NATO Science Series, Kluwer Academic Publishers, Boston/Dordrecht/London, 207-220.
  • “Time accelerated Monte Carlo simulations of biological networks using the binomial {tau}-leap method”, Chatterjee, A., Mayawala, K., Edwards, J. S. & Vlachos, D. G., Bioinformatics (2005).
• Cell analysis and manipulations
  • “Detection of microbial cells with electrooptical analysis”, O. V. Ignatov, O. I. Guliy, Bunin V. D., A. G. Voloshin., D. O’Neil, D. Ivnitski (2005). In: Dennis Morrison, Fred Milanovich, Dmitri Ivnitski, and Thomas Austin (eds). (2005). Defense Against Bioterror: Detection Technologies, Implementation Strategies and Commercial Opportunities. NATO Science Series, Kluwer Academic Publishers, Boston/Dordrecht/London, 147-163.
  • Victor D. Bunin, Oleg Ignatov, Olga I. Guliy, Irina Zaitseva, Daniel O’Neil, Dmitri Ivnitski. (2004). Electro-Optical Analysis of the Escherichia coli-Phage Interaction. Analytical Biochemistry, 328, 181-186.
  • “Cell-Directed Assembly of Lipid-Silica Nanostructures Providing Extended Cell Viability,” H.K., Ashley, C.; Carnes, E.; Lopez, D.; Flemming, J.; Dunphy D.; Singh, S.; Chen Z.; Liu, N.; Fan, H.; Lopez, G.P.; Brozik, S.M;. Werner-Washburne, M.; Brinker, C.J., Science 2006, 313, 337-341.
  • "Cell Sheet Detachment Affects the Extracellular Matrix: A Surface Science Study Comparing Thermal Lift-off, Enzymatic and Mechanical Methods," Canavann, H.E.; Cheng, X.; Graham, D.J.; Ratner, B.D.; and Castner, D.G., Journal of Biomedical Materials Research, 75A (1), 1-13 (2005).
  • "Surface Chemical and Mechanical Properties of Plasma Polymerized N-isopropylacrylamide", Cheng, X.; Canavan, H.E.; Stein, M.J.; Hull, J.R.; Hull, J.R.; Kweskin, S.J.; Wagner, M.S.; Somorjai, G.A.; Castner, D.G.; and Ratner, B.D., Langmuir, 21 (17) 7833-7841 (2005).
  • "Surface Characterization of the Extracellular Matrix upon Cell Detachment from a Thermoresponsive Polymer," Canavan, H.E.; Cheng, X.; Graham, D.J.; Ratner, B.D.; and Castner, D.G., Langmuir, 21 (5), 1949-1955 (2005).
  • “Heterogeneities in EGF receptor density at the cell surface can lead to concave up scatchard plot of EGF binding”, Mayawala, K., Vlachos, D. G. & Edwards, J. S. FEBS Lett 579, 3043-7 (2005).
  • “Parallel analysis of human glucose-6-phosphate dehydrogenase single-nucleotide mutants via functional complementation in S. cerevisiae using polymerase colonies”, Merritt, J., Butz, J. A., Ogunnaike, B. A. & Edwards, J. S. Biotech Bioeng. (2005).
  • “Isolation of quiescent and non-quiescent cells from Saccharomyces cerevisiae stationary phase cultures”, Chris Allen, Sabrina Büttner, Anthony D. Aragon, Jason A. Thomas, Osorio Meirelles, Jason E. Jaetao, Don Benn, Stephanie W. Ruby, Marten Veenhuis, Frank Madeo, and Margaret Werner-Washburne, J Cell Biology 174:89-100 (2006).
  • “Cell-Directed Assembly of the Bio-Nano Interface”, HK Baca, C Ashley, E Carnes, D Lopez, J Flemming, D Dunphy, S Singh, Z Chen, N, Liu, H Fan, GP López, SM Brozik, M Werner-Washburne, CJ Brinker, Science 313: 337-341 (2006).
  • “An Automated, Pressure-Driven Sampling Device for Harvesting from Liquid Cultures for Genomic and Biochemical Analyses”, Anthony D. Aragon, Gabriel A. Quiñones, Chris Allen, Jason Thomas, Sushmita Roy, George S. Davidson, Peter D. Wentzell, Brian Millier, Jason E. Jaetao, Angelina L. Rodriguez, and Margaret Werner-Washburne Journal of Microbiological Methods doi:10.1016/j.mimet.2005.08.015. Web supplement ; PDF
• Bioinformatics and computational analysis
  • “Multivariate curve resolution of time course microarray data”, Peter D Wentzell, Tobias K Karakach, Sushmita Roy, M Juanita Martinez, Christopher P Allen, and Margaret Werner-Washburne. BMC Computational Biology 7:343 (2006).
  • “A Hidden-state Markov Model for Cell Population Deconvolution”, S. Roy, T. Lane, C. Allen, A.D. Aragon, M. Werner-Washburne.  Journal of Computational Biology 13:174901774 (2006).
  • “Inferring genetic networks from microarray data”, S. Martin, G. Davidson, E. May, J-L Faulon, and M. Werner-Washburne IEEE 2004, pg. 566-569 (2004).
• Biotechniques
  • “Development of microformat imaging microplate and membrane immunoenzyme assays of the herbicide atrazine”, Hendrickson, O.D., Warnmark-Surugiu, I., Sitdikov, R., Zherdev, A.V., Dzantiev, B.B. and  Danielsson, B. (2005), International Journal of Environemental Analytical Chemistry, v.85, no.12-13, p.905-915.
  • "On-Line Optical Fiber Detection in a Preparative Vortex-Stabilized Free-Flow Electrofocusing Apparatus", Bottenus, D. and C. F. Ivory, Biotechnology Progress 22(3): 842-846 (2006).
    Ivory, C. F., “Preparative Free-Flow Electrofocusing in a Vortex-Stabilized Annulus,” Electrophoresis, 25: 360-374 (2004).

©2009 University of New Mexico. Center for Biomedical Engineering. All Rights Reserved.